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Epigenetics in breast cancer therapy—New strategies and future nanomedicine perspectives

Buociková, Verona; Rios Mondragon, Ivan; Pilalis, Eleftherios; Chatziioannou, Aristotelis; Miklíková, Svetlana; Mego, Michal; Pajuste, Karlis; Rucins, Martins; El Yamani, Naouale; Longhin, Eleonora Marte; Sobolev, Arkadij; Freixanet, Muriel; Puntes, Victor; Plotniece, Aiva; Dusinska, Maria; Cimpan, Mihaela Roxana; Gábelová, Alena; Smolková, Božena

Epigenetic dysregulation has been recognized as a critical factor contributing to the development of resistance against standard chemotherapy and to breast cancer progression via epithelial-to-mesenchymal transition. Although the efficacy of the first-generation epigenetic drugs (epi-drugs) in solid tumor management has been disappointing, there is an increasing body of evidence showing that epigenome modulation, in synergy with other therapeutic approaches, could play an important role in cancer treatment, reversing acquired therapy resistance. However, the epigenetic therapy of solid malignancies is not straightforward. The emergence of nanotechnologies applied to medicine has brought new opportunities to advance the targeted delivery of epi-drugs while improving their stability and solubility, and minimizing off-target effects. Furthermore, the omics technologies, as powerful molecular epidemiology screening tools, enable new diagnostic and prognostic epigenetic biomarker identification, allowing for patient stratification and tailored management. In combination with new-generation epi-drugs, nanomedicine can help to overcome low therapeutic efficacy in treatment-resistant tumors. This review provides an overview of ongoing clinical trials focusing on combination therapies employing epi-drugs for breast cancer treatment and summarizes the latest nano-based targeted delivery approaches for epi-drugs. Moreover, it highlights the current limitations and obstacles associated with applying these experimental strategies in the clinics.

MDPI

2020

The regional European atmospheric transport inversion comparison, EUROCOM: first results on European-wide terrestrial carbon fluxes for the period 2006–2015

Monteil, Guillaume; Broquet, Grégoire; Scholze, Marko; Lang, Matthew; Karstens, Ute; Gerbig, Christoph; Koch, Frank-Thomas; Smith, Naomi; Thompson, Rona Louise; Luijkx, Ingrid T.; White, Emily; Meesters, Antoon; Ciais, Philippe; Ganesan, Anita L.; Manning, Alistair; Mischurow, Michael; Peters, Wouter; Peylin, Philippe; Tarniewicz, Jerome; Rigby, Matt; Rödenbeck, Christian; Vermeulen, Alex; Walton, Evie M.

Atmospheric inversions have been used for the past two decades to derive large-scale constraints on the sources and sinks of CO2 into the atmosphere. The development of dense in situ surface observation networks, such as ICOS in Europe, enables in theory inversions at a resolution close to the country scale in Europe. This has led to the development of many regional inversion systems capable of assimilating these high-resolution data, in Europe and elsewhere. The EUROCOM (European atmospheric transport inversion comparison) project is a collaboration between seven European research institutes, which aims at producing a collective assessment of the net carbon flux between the terrestrial ecosystems and the atmosphere in Europe for the period 2006–2015. It aims in particular at investigating the capacity of the inversions to deliver consistent flux estimates from the country scale up to the continental scale.

The project participants were provided with a common database of in situ-observed CO2 concentrations (including the observation sites that are now part of the ICOS network) and were tasked with providing their best estimate of the net terrestrial carbon flux for that period, and for a large domain covering the entire European Union. The inversion systems differ by the transport model, the inversion approach, and the choice of observation and prior constraints, enabling us to widely explore the space of uncertainties.

This paper describes the intercomparison protocol and the participating systems, and it presents the first results from a reference set of inversions, at the continental scale and in four large regions. At the continental scale, the regional inversions support the assumption that European ecosystems are a relatively small sink (−0.21±0.2
 Pg C yr−1). We find that the convergence of the regional inversions at this scale is not better than that obtained in state-of-the-art global inversions. However, more robust results are obtained for sub-regions within Europe, and in these areas with dense observational coverage, the objective of delivering robust country-scale flux estimates appears achievable in the near future.

2020

An optimized comet-based in vitro DNA repair assay to assess base and nucleotide excision repair activity

Vodenkova, Sona; Azqueta, Amaya; Collins, Andrew Richard; Dusinska, Maria; Gaivao, Isabel; Møller, Peter; Opattová, Alena; Vodicka, Pavel; Godschalk, Roger W. L.; Langie, Sabine A.S.

2020

Investigation of the wet removal rate of black carbon in East Asia: validation of a below- And in-cloud wet removal scheme in FLEXible PARTicle (FLEXPART) model v10.4

Choi, Yongjoo; Kanaya, Yugo; Takigawa, Masayuki; Zhu, Chunmao; Park, Seung-Myung; Matsuki, Atsushi; Sadanaga, Yasuhiro; Kim, Sang-Woo; Pan, Xiaole; Pisso, Ignacio

Understanding the global distribution of atmospheric black carbon (BC) is essential for unveiling its climatic effect. However, there are still large uncertainties regarding the simulation of BC transport due to inadequate information about the removal process. We accessed the wet removal rate of BC in East Asia based on long-term measurements over the 2010–2016 period at three representative background sites (Baengnyeong and Gosan in South Korea and Noto in Japan). The average wet removal rate, represented by transport efficiency (TE), i.e., the fraction of undeposited BC particles during transport, was estimated to be 0.73 in East Asia from 2010 to 2016. According to the relationship between accumulated precipitation along trajectory and TE, the wet removal efficiency was lower in East and North China but higher in South Korea and Japan, implying the importance of the aging process and frequency of exposure to below- and in-cloud scavenging conditions during air mass transport. Moreover, the wet scavenging in winter and summer showed the highest and lowest efficiency, respectively, although the lowest removal efficiency in summer was primarily associated with a reduced BC aging process because the in-cloud scavenging condition was dominant. The average half-life and e-folding lifetime of BC were 2.8 and 7.1 d, respectively, which is similar to previous studies, but those values differed according to the geographical location and meteorological conditions of each site. Next, by comparing TE from the FLEXible PARTicle (FLEXPART) Lagrangian transport model (version 10.4), we diagnosed the scavenging coefficients (s−1) of the below- and in-cloud scavenging scheme implemented in FLEXPART. The overall median TE from FLEXPART (0.91) was overestimated compared to the measured value, implying the underestimation of wet scavenging coefficients in the model simulation. The median of the measured below-cloud scavenging coefficient showed a lower value than that calculated according to FLEXPART scheme by a factor of 1.7. On the other hand, the overall median of the calculated in-cloud scavenging coefficients from the FLEXPART scheme was highly underestimated by 1 order of magnitude, compared to the measured value. From an analysis of artificial neural networks, the convective available potential energy, which is well known as an indicator of vertical instability, should be considered in the in-cloud scavenging process to improve the representative regional difference in BC wet scavenging over East Asia. For the first time, this study suggests an effective and straightforward evaluation method for wet scavenging schemes (both below and in cloud), by introducing TE along with excluding effects from the inaccurate emission inventories.

2020

Impact of genetic polymorphisms in kinetochore and spindle assembly genes on chromosomal aberration frequency in healthy humans

Niazi, Yasmeen; Thomsen, Hauke; Smolkova, Bozena; Vodickova, Ludmila; Vodenkova, Sona; Kroupa, Michal; Vymetalkova, Veronika; Kazimirova, Alena; Barancokova, Magdalena; Volkovova, Katarina; Hoffmann, Per; Nöthen, Markus M.; Dusinska, Maria; Musak, Ludovit; Vodicka, Pavel; Hemminki, Kari; Försti, Asta

2020

Atmospheric new particle formation characteristics in the Arctic as measured at Mount Zeppelin, Svalbard, from 2016 to 2018

Lee, Haebum; Lee, Kwangyul; Lunder, Chris Rene; Krejci, Radovan; Aas, Wenche; Park, Jiyeon; Park, Ki-Tae; Lee, Bang Yong; Yoon, Young Jun; Park, Kihong

We conducted continuous measurements of nanoparticles down to 3 nm size in the Arctic at Mount Zeppelin, Ny Ålesund, Svalbard, from October 2016 to December 2018, providing a size distribution of nanoparticles (3–60 nm). A significant number of nanoparticles as small as 3 nm were often observed during new particle formation (NPF), particularly in summer, suggesting that these were likely produced near the site rather than being transported from other regions after growth. The average NPF frequency per year was 23 %, having the highest percentage in August (63 %). The average formation rate (J) and growth rate (GR) for 3–7 nm particles were 0.04 cm−3 s−1 and 2.07 nm h−1, respectively. Although NPF frequency in the Arctic was comparable to that in continental areas, the J and GR were much lower. The number of nanoparticles increased more frequently when air mass originated over the south and southwest ocean regions; this pattern overlapped with regions having strong chlorophyll a concentration and dimethyl sulfide (DMS) production capacity (southwest ocean) and was also associated with increased NH3 and H2SO4 concentration, suggesting that marine biogenic sources were responsible for gaseous precursors to NPF. Our results show that previously developed NPF occurrence criteria (low loss rate and high cluster growth rate favor NPF) are also applicable to NPF in the Arctic.

2020

Global occurrence, chemical properties, and ecological impacts of e-wastes (IUPAC Technical Report)

Purchase, Diane; Abbasi, Golnoush; Bisschop, Lieselot; Chatterjee, Debashish; Ekberg, Christian; Ermolin, Mikhail; Fedotov, Petr; Garelick, Hemda; Isimekhai, Khadijah; Kandile, Nadia G.; Lundström, Mari; Matharu, Avtar; Miller, Bradley W.; Pineda, Antonio; Popoola, Oluseun E.; Retegan, Teodora; Ruedel, Heinz; Serpe, Angela; Sheva, Yehuda; Surati, Kiran R.; Walsh, Fiona; Wilson, Benjamin P.; Wong, Ming Hung

The waste stream of obsolete electronic equipment grows exponentially, creating a worldwide pollution and resource problem. Electrical and electronic waste (e-waste) comprises a heterogeneous mix of glass, plastics (including flame retardants and other additives), metals (including rare Earth elements), and metalloids. The e-waste issue is complex and multi-faceted. In examining the different aspects of e-waste, informal recycling in developing countries has been identified as a primary concern, due to widespread illegal shipments; weak environmental, as well as health and safety, regulations; lack of technology; and inadequate waste treatment structure. For example, Nigeria, Ghana, India, Pakistan, and China have all been identified as hotspots for the disposal of e-waste. This article presents a critical examination on the chemical nature of e-waste and the resulting environmental impacts on, for example, microbial biodiversity, flora, and fauna in e-waste recycling sites around the world. It highlights the different types of risk assessment approaches required when evaluating the ecological impact of e-waste. Additionally, it presents examples of chemistry playing a role in potential solutions. The information presented here will be informative to relevant stakeholders seeking to devise integrated management strategies to tackle this global environmental concern.

2020

Are Fluoropolymers Really of Low Concern for Human and Environmental Health and Separate from Other PFAS?

Lohmann, Rainer; Cousins, Ian T.; DeWitt, Jamie; Glüge, Juliane; Goldenman, Gretta; Herzke, Dorte; Lindstrom, Andrew B.; Miller, Mark F.; Ng, Carla A.; Patton, Sharyle; Scheringer, Martin; Trier, Xenia; Wang, Zhanyun

2020

Evaluation of climate model aerosol trends with ground-based observations over the last 2 decades – an AeroCom and CMIP6 analysis

Mortier, Augustin; Gliss, Jonas; Schulz, Michael; Aas, Wenche; Andrews, Elisabeth; Bian, Huisheng; Chin, Mian; Ginoux, Paul; Hand, Jenny; Holben, Brent; Zhang, Hua; Kipling, Zak; Kirkevåg, Alf; Laj, Paolo; Lurton, Thibault; Myhre, Gunnar; Neubauer, David; Oliviè, Dirk Jan Leo; Salzen, Knut von; Skeie, Ragnhild Bieltvedt; Takemura, Toshihiko; Tilmes, Simone

This study presents a multiparameter analysis of aerosol trends over the last 2 decades at regional and global scales. Regional time series have been computed for a set of nine optical, chemical-composition and mass aerosol properties by using the observations from several ground-based networks. From these regional time series the aerosol trends have been derived for the different regions of the world. Most of the properties related to aerosol loading exhibit negative trends, both at the surface and in the total atmospheric column. Significant decreases in aerosol optical depth (AOD) are found in Europe, North America, South America, North Africa and Asia, ranging from −1.2 % yr−1 to −3.1 % yr−1. An error and representativity analysis of the spatially and temporally limited observational data has been performed using model data subsets in order to investigate how much the observed trends represent the actual trends happening in the regions over the full study period from 2000 to 2014. This analysis reveals that significant uncertainty is associated with some of the regional trends due to time and space sampling deficiencies. The set of observed regional trends has then been used for the evaluation of 10 models (6 AeroCom phase III models and 4 CMIP6 models) and the CAMS reanalysis dataset and of their skills in reproducing the aerosol trends. Model performance is found to vary depending on the parameters and the regions of the world. The models tend to capture trends in AOD, the column Ångström exponent, sulfate and particulate matter well (except in North Africa), but they show larger discrepancies for coarse-mode AOD. The rather good agreement of the trends, across different aerosol parameters between models and observations, when co-locating them in time and space, implies that global model trends, including those in poorly monitored regions, are likely correct. The models can help to provide a global picture of the aerosol trends by filling the gaps in regions not covered by observations. The calculation of aerosol trends at a global scale reveals a different picture from that depicted by solely relying on ground-based observations. Using a model with complete diagnostics (NorESM2), we find a global increase in AOD of about 0.2 % yr−1 between 2000 and 2014, primarily caused by an increase in the loads of organic aerosols, sulfate and black carbon.

2020

Minimum Information for Reporting on the Comet Assay (MIRCA): recommendations for describing comet assay procedures and results

Møller, Peter; Azqueta, Amaya; Boutet-Robinet, Elisa; Koppen, Gudrun; Bonassi, Stefano; Milic, Mirta; Gajski, Goran; Costa, Solange; Teixeira, João Paulo; Pereira, Cristiana Costa; Dusinska, Maria; Godschalk, Roger; Brunborg, Gunnar; Gutzkow, Kristine Bjerve; Giovannelli, Lisa; Cooke, Marcus S.; Richling, Elke; Laffon, Blanca; Valdiglesias, Vanessa; Basaran, Nursen; Del Bo, Cristian; Zegura, Bojana; Novak, Matjaz; Stopper, Helga; Vodicka, Pavel; Vodenkova, Sona; de Andrade, Vanessa Moraes; Srámková, Monika; Gábelová, Alena; Collins, Andrew Richard; Langie, Sabine A.S.

The comet assay is a widely used test for the detection of DNA damage and repair activity. However, there are interlaboratory differences in reported levels of baseline and induced damage in the same experimental systems. These differences may be attributed to protocol differences, although it is difficult to identify the relevant conditions because detailed comet assay procedures are not always published. Here, we present a Consensus Statement for the Minimum Information for Reporting Comet Assay (MIRCA) providing recommendations for describing comet assay conditions and results. These recommendations differentiate between ‘desirable’ and ‘essential’ information: ‘essential’ information refers to the precise details that are necessary to assess the quality of the experimental work, whereas ‘desirable’ information relates to technical issues that might be encountered when repeating the experiments. Adherence to MIRCA recommendations should ensure that comet assay results can be easily interpreted and independently verified by other researchers.

2020

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